PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0307581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 228aa    MW: 25970 Da    PI: 10.1121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0307581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16135223298
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             +k++++s+v+   +l l  +f++++ +kk  +  +tl de+g+++e  +  rk++    l++GWk+F+ a++L +gD vvF+l++  
  RcHm_v2.0_Chr6g0307581 135 VKTMLQSHVTGGFWLGLQVQFCKDYLSKK--DEIMTLVDEDGNEYETIYLARKTG----LSGGWKGFAVAHDLVDGDAVVFQLIK-- 213
                             699**********************6664..4479**************656665....***********************987.. PP

                             EE..EEEEE- CS
                      B3  89 efelvvkvfr 98 
                              ++++v ++r
  RcHm_v2.0_Chr6g0307581 214 PTTMKVYIIR 223
                             6777998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAKPKTVSYE ESRKQRLEEN RKRMEALNLP QLSLALKTSS SPKSSPMKRT PKPKAEKQMV  60
VVRRSSRVAN LPSPPVYKEM EVVERVMIPR RYSGSTSKHR DLSNRVYASY EDRMDAMAKA  120
EKLESDLGSD YPTLVKTMLQ SHVTGGFWLG LQVQFCKDYL SKKDEIMTLV DEDGNEYETI  180
YLARKTGLSG GWKGFAVAHD LVDGDAVVFQ LIKPTTMKVY IIRVERKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-71B3 family protein