PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0307721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 220aa    MW: 25109.8 Da    PI: 10.1129
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0307721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.8e-17127216198
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+k +++s+v+   +l lp +f++++  + +++  ++l de+g+++   +   +++++  l++GW++F  a++L +gD +vF+l++ 
  RcHm_v2.0_Chr6g0307721 127 FVKPMLQSHVTGGFWLGLPLPFCRKYL-P-KRDAAVMLVDEEGEEYPTVY--LGNKNG--LSGGWRGFSIAHELVDGDALVFQLIRP 207
                             89************************5.3.36679***************..666666..9***********************997 PP

                             SEE..EEEEE- CS
                      B3  88 sefelvvkvfr 98 
                             ++f  +v ++r
  RcHm_v2.0_Chr6g0307721 208 TTF--KVYIIR 216
                             777..888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MAKPKTSYEE TRKQRMEENR KRMEALNLPQ LAQAFQTSSS PKPSPMKRQK PRKVEKQIVE  60
VRRSARVASQ PTPVYREVEV KVPRSYGRIS KHRDLSNRVY ASEYARAEAT EKAEELESGL  120
GSDYPTFVKP MLQSHVTGGF WLGLPLPFCR KYLPKRDAAV MLVDEEGEEY PTVYLGNKNG  180
LSGGWRGFSI AHELVDGDAL VFQLIRPTTF KVYIIRVESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-77B3 family protein