PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0307731

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 251aa MW: 28806.2 Da PI: 9.6572

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0307731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	9.9e-16	135	213	2	86
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +k++++s+v+ +l l +f++++ +kk + +tl de+g+++e + rk++ l++GWk+F+ a++L +gD vvF+l++ RcHm_v2.0_Chr6g0307731 135 VKTMLQSHVTGGFWLGLQVQFCKDYLSKK--DEIMTLVDEDGNEYETIYLARKTG----LSGGWKGFAVAHDLVDGDAVVFQLIK 213 699********************6664..4479**********656665....*********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MAKPKTVSYE ESRKQRLEEN RKRMEALNLP QLSLALKTSS SPKSSPMKRT PKPKAEKQMV 60 VVRRSSRVAN LPSPPVYKEM EVVERVMIPR RYSGSTSKHR DLSNRVYASY EDRMDAMAKA 120 EKLESDLGSD YPTLVKTMLQ SHVTGGFWLG LQVQFCKDYL SKKDEIMTLV DEDGNEYETI 180 YLARKTGLSG GWKGFAVAHD LVDGDAVVFQ LIKPTTMKVI YYHILMIEDT LKPFKVQDRY 240 SILVDYDKES F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	8e-68	B3 family protein