PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308101
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 249aa    MW: 28028.7 Da    PI: 8.6996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308101genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08141181954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  RcHm_v2.0_Chr6g0308101 141 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 181
                             699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDINQLKSEE QMEMMMMMQM DKISELCGAY NDVVSDLPSS EHFPGSATSM PQYCHDQNPH  60
NVSSPPPSFL NLSPSTISFT NSLEQSPQPQ LASDKRASMA AMREMIFRIA SMQPIHIDPE  120
SVKPPKRRNV KISKDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF  180
LKSQVQTLER AAVNNNNNNN NNNNRVPQTG IGFPVAMSSG SNYLSNSMAK AYQAHPPQHH  240
QNVRHFEDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-43bHLH family protein