PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0308161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 395aa MW: 44263.7 Da PI: 8.1429

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0308161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	6.9e-36	26	118	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkk RcHm_v2.0_Chr6g0308161 26 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKK 103 9***************************************************************99.........****** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g+k+ll++i+r+k++ RcHm_v2.0_Chr6g0308161 104 GEKHLLCEIHRRKTA 118 **********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MALMIDNCGE GILLSLDSHK SVPAPFLTKT YQLVDDPATD HIVSWGEDDT TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTAQP 120 TQLPINHHHH GHHQYPHSPL GNHHVVTGPG FFPFQPSRGS NSPSDSDDQF PNWCDSPPPL 180 VSSPPSGGGG PLNTSYCSNV ATNTVTALSE DNERLRRSNT MLMSELNHMR KLYNDIIYFV 240 QNHVKPVAPS NSYPGSLLLC NPSQNTLNTN SSAAINKPLN QVLGYYHGNP KQNQPHHQPM 300 AHVMMNNNNV SSPTTTTTSK STSSVTIIED RPGNISNNNG CKTKLFGVPL LHSKKRLHPE 360 YNNGSNHMAM EASKTRLILE KDHDLGLHLM PPSTC

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MALMIDNCGE GILLSLDSHK SVPAPFLTKT YQLVDDPATD HIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTAQP  120
TQLPINHHHH GHHQYPHSPL GNHHVVTGPG FFPFQPSRGS NSPSDSDDQF PNWCDSPPPL  180
VSSPPSGGGG PLNTSYCSNV ATNTVTALSE DNERLRRSNT MLMSELNHMR KLYNDIIYFV  240
QNHVKPVAPS NSYPGSLLLC NPSQNTLNTN SSAAINKPLN QVLGYYHGNP KQNQPHHQPM  300
AHVMMNNNNV SSPTTTTTSK STSSVTIIED RPGNISNNNG CKTKLFGVPL LHSKKRLHPE  360
YNNGSNHMAM EASKTRLILE KDHDLGLHLM PPSTC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-109	HSF family protein