PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 210aa    MW: 23622.9 Da    PI: 9.5084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-112063855
                            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            +Er RR+++++ f+ L  llP++      K +  +i+ +Av+YIksL+
  RcHm_v2.0_Chr6g0308241 20 VERERRKKMKDMFSSLHALLPQL----PAKADHCTIVDEAVRYIKSLE 63
                            6*********************6....39*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MEKEVNESRK GQKAGGGAWV ERERRKKMKD MFSSLHALLP QLPAKADHCT IVDEAVRYIK  60
SLEHTLQTAQ KQRLTKLRSS ASTSITSKTE ARSDAGVTRK AFLADHFQEE EDRPSKKLAC  120
GNNPSPTSLD SQQASCFKTW FSPNIVVNIC GNEAHVSVCS PRRPGLLSTV FYILEKHKLD  180
VISAHISSDQ HRCMYMIHAH YVSPQNFLLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-42bHLH family protein