PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 279aa    MW: 31157.9 Da    PI: 6.8419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.29.3e-25111421127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknra 77 
                             lppG+rF P++e+l+++yL +k  + +    +   + ike+d+y+++P dLp        + +++++wy ++ r  k       +r 
  RcHm_v2.0_Chr6g0308271  11 LPPGCRFYPSEEQLLCYYLSHKNGAGQassgNGGYDLIKELDLYDHDPFDLPdYacysyGHGGRRRHWYCYTVRVVK-------ERR 90 
                             79********************998884444334458***************5356543222355588888877654.......344 PP

                     NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyr 127
                             +ksgyW+ +g+ ++v+ + ++++ g + +  fy g++pk +++tdWv+ +y+
  RcHm_v2.0_Chr6g0308271  91 AKSGYWRRKGRVRDVVGRgGKAVLGRRSSYEFYLGSSPKtAVRTDWVLYQYA 142
                             689**************9566679*********997766167*********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGDAKATSYY LPPGCRFYPS EEQLLCYYLS HKNGAGQASS GNGGYDLIKE LDLYDHDPFD  60
LPDYACYSYG HGGRRRHWYC YTVRVVKERR AKSGYWRRKG RVRDVVGRGG KAVLGRRSSY  120
EFYLGSSPKT AVRTDWVLYQ YAQVDHVQAS FVLCRVFVRS QGGTSKSENG LSSCAEESVS  180
TVRHIGIQHG GFCTPHIVPE IHSDKSVPRN TDKSKDQMTL ETEVDKQVET GPLSSIQTNE  240
QVPSSMLGVG NPLLLDGLAT EHLLSLIEGD FIELDDLID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-20NAC family protein