PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 175aa    MW: 19955.7 Da    PI: 9.2629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.84e-27111392128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 
                             ppGfrFhP++++l+++yL +k ++  ++   ++i+e+ d+   +P++L++       +k+++++wyf++   +++      ++ tk+
  RcHm_v2.0_Chr6g0308281  11 PPGFRFHPSEQQLLSYYLSNKKANPAIPGgYNTIRELsDLRGRDPSELQNwscysyGYKGRKRHWYFYTAGVSAE------EKNTKQ 91 
                             9********************999998772455***99**********966787765666888*****9987754......567899 PP

                     NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             g Wk +gk ++v+s++g + g+++++v+y+g+  +++ t Wv+ +y+l
  RcHm_v2.0_Chr6g0308281  92 GCWKRKGKVRDVFSRQGVVLGTRTSFVYYDGSPDTASPTAWVLYQYAL 139
                             **********************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MADSKSTDAF PPGFRFHPSE QQLLSYYLSN KKANPAIPGG YNTIRELSDL RGRDPSELQN  60
WSCYSYGYKG RKRHWYFYTA GVSAEEKNTK QGCWKRKGKV RDVFSRQGVV LGTRTSFVYY  120
DGSPDTASPT AWVLYQYALA NHVEVIIFTC ACSFALVSMY ICCPFSYWIL GRLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.28e-18NAC family protein