PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 229aa    MW: 25902.4 Da    PI: 9.6941
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.7e-2192151357
                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  RcHm_v2.0_Chr6g0308351  92 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 151
                             7*****************99**************************************97 PP
2Wus_type_Homeobox118.43.1e-3892153465
       Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                             tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
  RcHm_v2.0_Chr6g0308351  92 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 153
                             8***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MGMSSMKVHQ FARGLWDSST TNLEPSLSLG CKRLRPLAPK LSDTTATTTL APFDLKSFIR  60
PESGPRNKLA SPHDHEKKDS SPSQVEMHPG GTRWNPTQEQ IGILEMLYRG GMRTPNAQQI  120
EQITAQLGKY GKIEGKNVFY WFQNHKARER QKQKRSTLGL THSPRTPTPV ITTTGEVLER  180
EEDSPYKRKC RSWAFDCLGD DSSTITCNKD VVEGDRTLEL FPLRPEGMR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-75WOX family protein