PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0308381

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 431aa MW: 49043.1 Da PI: 6.442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0308381	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	164	187	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +L++H + H RcHm_v2.0_Chr6g0308381 164 YICGVCGRKCKSNLDLTKHFKQlH 187 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MVNPIICNPI HTTLPYNKPL PLLFLNSSQS PFFNSQINLT LNPKPSSSIS FNKRRWRRSY 60 TAVTSAANSE IDMVRNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQHFGEV 120 VDVSAYANRH AFIHLPNWVV EQRRERKQLD ILERKGIVTP PQPYICGVCG RKCKSNLDLT 180 KHFKQLHERE RQKKLNRMRS LKGKKRQRFK ERFISGNHKY NEAASTLIKP KVGYGLAAEL 240 RRAGVFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSDMLR KARESSLGTV 300 VVGDWDRALG RHADVWVPWT GLEKGEISEK DLVPKRRRSE FSDEDEEEED GDVSVFSDLG 360 FSGGSELDNV VDDLVGLRSQ GSGGMRISAF SEGEVEAGDW EEDYEESEDG DYLLEDSEDE 420 DSEDEYGCGT V

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MVNPIICNPI HTTLPYNKPL PLLFLNSSQS PFFNSQINLT LNPKPSSSIS FNKRRWRRSY  60
TAVTSAANSE IDMVRNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQHFGEV  120
VDVSAYANRH AFIHLPNWVV EQRRERKQLD ILERKGIVTP PQPYICGVCG RKCKSNLDLT  180
KHFKQLHERE RQKKLNRMRS LKGKKRQRFK ERFISGNHKY NEAASTLIKP KVGYGLAAEL  240
RRAGVFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSDMLR KARESSLGTV  300
VVGDWDRALG RHADVWVPWT GLEKGEISEK DLVPKRRRSE FSDEDEEEED GDVSVFSDLG  360
FSGGSELDNV VDDLVGLRSQ GSGGMRISAF SEGEVEAGDW EEDYEESEDG DYLLEDSEDE  420
DSEDEYGCGT V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-169	C2H2 family protein