PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0309381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 219aa    MW: 23305.6 Da    PI: 7.8822
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0309381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-292102196
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++
  RcHm_v2.0_Chr6g0309381   2 SCNGCRVLRKGCSETCILRSCLrlidcPESQGNATLFLAKFFGRSDLLSFISAVPENQRPALFQSLLFEACGRTVNPVSGAVGLLSS 88 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelal 96 
                             +++++++++++++l
  RcHm_v2.0_Chr6g0309381  89 GNWHVCHAAVQAVL 102
                             ********999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSCNGCRVLR KGCSETCILR SCLRLIDCPE SQGNATLFLA KFFGRSDLLS FISAVPENQR  60
PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCHAAVQA VLSGGVLRPL PAISTPKLEE  120
SSVTFDRGAC GIQDLHYTSV PSMFYDDVER SQPLDVALSL KPNLAAAAAG GRGRARGRSC  180
AIERSMRDTV SFNSEDSIMT TSAGGGDSNG DRKLLNLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-60LBD family protein