PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0309391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 268aa    MW: 28480.6 Da    PI: 8.5971
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0309391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05104126123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ykC+ C+ksF++   L  H  +H
  RcHm_v2.0_Chr6g0309391 104 YKCSVCDKSFPSYQALGGHKASH 126
                             9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MALEALNSPT AAGQGFHYDE PKLQYSEPWT KRKRSKRPRS VEQTQVSEEE YLALCLIMLA  60
RGGHSGGPIT AAASHRSQSP VPSVSPVIEQ ATSAPAKENQ LLSYKCSVCD KSFPSYQALG  120
GHKASHRKGS SAVTGGEGPS TSSTTTTTSA ATVSNASGRS HECSICHKSF PTGQALGGHK  180
RCHYEGGATA TRSAATTSAV TTSEGVGSTT HTVSQSHQHR EAFDLNLPAF PEPLSRNFFL  240
SGDDEVESPH PTKKPRLFMT PKVEISLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-48C2H2 family protein