PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0310331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 342aa    MW: 37882.5 Da    PI: 7.7339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0310331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07119140426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             + C++f++ G C  Gd+C FaHg
  RcHm_v2.0_Chr6g0310331 119 SACPDFRK-GNCAKGDSCEFAHG 140
                             67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MMLGEPSRLA PTLKVAPWDP FDDPTSGLGS PFSVRSPSAN AGFLDSLSAL HRFLPSNESD  60
SLSDDPDMPL ISCDQFRMFE FKVRRCARGR SHDWTECPYA HPGEKARRRD PRKYHYSGSA  120
CPDFRKGNCA KGDSCEFAHG VFECWLHPAR YRTQPCKDGL ACHRRVCFFA HTPEQLRVLP  180
GHSPRTHGPG FFDSPTSPPI SPPSDSPPMS PNSPQLRLNS VSELVASMRN FKLAKMQMST  240
TPPSWVGSGF GSPRGPPLRP DFFSLPNTPT RNSGRSGPGP FDLWEHSLVE EPAMERVESG  300
RDLRARMYAK LSKDNSMGRV DSGGFSGPDV EWVSELVSEG EN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-109C3H family protein