PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0310911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 364aa    MW: 39383.1 Da    PI: 9.4979
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0310911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16210243134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             C  C t +TplWR+gp+g+k+LCnaCG+++rk +
  RcHm_v2.0_Chr6g0310911 210 CLDCSTNTTPLWRSGPRGPKSLCNACGIRQRKAR 243
                             889****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MGSTPTYLNP PSFPFSLENF VADQAAQDQR LKLFISSSLP YGGASCSLSF PAFFDSLTDQ  60
SGISSTSITV GDQALLYKGQ RANKSIWQGE TSYDQVCSSS SLVHPVSDVS NEEYRKLSVS  120
TDQIIENNED HESNTNRPVK WTPLTMKLMQ KMTHEPDQVP EKIPLTYKFQ SARRDDQHRE  180
TNTGETSSSS SLTISINKSS SSIVSAVRVC LDCSTNTTPL WRSGPRGPKS LCNACGIRQR  240
KARRSMAEAA AAAAATGLAG GTNGPAATSA ATTAKSSSMS KGKGKKSRQN HYVTVSFKKK  300
RKLIMTDDST STAAPSIHYK RNDKQLCNFK QVAASPPSAL FPRDVEEAAI LLMDLSSGPS  360
MNHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-16GATA family protein