PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 222aa    MW: 25138.1 Da    PI: 7.1779
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26075.41.1e-23101057100
                  DUF260   7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                             + r kC +dC lapyfpa+ ++k++ ++++FG   ++kllk+l   +++r++am+ +  eA++r  dPv G++gv+++    +++l+
  RcHm_v2.0_Chr6g0311041  10 HNRIKCDPDCWLAPYFPAHMHQKYKKAQQVFGKIYMTKLLKSLhkTPNKRSTAMKNIRAEADIRSADPVGGCYGVVKEQCAVIRRLE 96 
                             6777*************************************99656778************************************** PP

                  DUF260  92 aelallkee 100
                              e+a ++ee
  RcHm_v2.0_Chr6g0311041  97 REIAGQEEE 105
                             999988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MTWIFSSKEH NRIKCDPDCW LAPYFPAHMH QKYKKAQQVF GKIYMTKLLK SLHKTPNKRS  60
TAMKNIRAEA DIRSADPVGG CYGVVKEQCA VIRRLEREIA GQEEELRRLR SQLGGGGGGG  120
SVNVAMAQPP LATAMYQEQS YNTFQQNLEE QNYNASQGYD QEQGNFAQGF PHVHPEEGNI  180
VQGYRIRQEQ TDIDAQSQGY VQAPTHLPET NQEQGDIFLF QG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-20LBD family protein