PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311051
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 187aa    MW: 21392.4 Da    PI: 8.6303
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.73.9e-336104199
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +Ca+C++ r kC++dC+lapyfp++ ++kf+n++k+FG s++ +ll++lp+++r++am+ ++ eA++r+ dPv G++g++++l+ ++
  RcHm_v2.0_Chr6g0311051   6 SCASCRHNRSKCVRDCPLAPYFPSHMHQKFKNARKVFGESHLKQLLRSLPPHKRSTAMKHIIAEADIRVADPVGGSYGLVRNLELKI 92 
                             6************************************************************************************** PP

                  DUF260  88 eqlkaelallke 99 
                             +++++el +l++
  RcHm_v2.0_Chr6g0311051  93 AEEEEELRRLRN 104
                             ******998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MNKYQSCASC RHNRSKCVRD CPLAPYFPSH MHQKFKNARK VFGESHLKQL LRSLPPHKRS  60
TAMKHIIAEA DIRVADPVGG SYGLVRNLEL KIAEEEEELR RLRNVLSVFR GRGSGSVVAQ  120
PLVQKQGYIV QEHDNINYQG YHIPVLPIVP GGFLHALLHQ EQRNNMFDLR DEVVPEHDVN  180
PNQGEEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-24LBD family protein