PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0311101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 515aa MW: 55924.9 Da PI: 8.9031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0311101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RcHm_v2.0_Chr6g0311101 64 FVCEVCNKGFQREQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	12.4	0.00046	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + RcHm_v2.0_Chr6g0311101 140 WKCEKCSKRYAVQSDWKAHSKIC 162 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MSNLTCASGD LSASANSSIR NDSSSSTQQQ QPPQKKKRNL PGNPDPDAEV IALSPKSLMA 60 TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYLCPEP TCVHHDPSRA 120 LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRRDS 180 FITHRAFCDA LAQENSNAAR AINPLLSSSL PQLHGGFQPH HLSHHHVKRE VQDLQLQLPP 240 WMGGEAAASA GPSHHLSSNI NLSSSSPLFS TSSFDHQQSF LHQNPNPSSS DFQPSASAHM 300 SATALLQKAS EMGATVSKPS SMFLKPHDQQ HQASHMMPET TAFGSFMEQA GANSGGAAAA 360 SNNSLLHDMM MMTSHLQQSS SAARGGFDQL SSSPSFGDHH HQGFNGSMVM GSFAENVNPS 420 PQKKLITGES QLRRTSSTTD GGGGGGGSGG GGGGMNEGMT RDFLGLRAFS SQDDQDFFNM 480 AAAHGLDQHV VNSTSSANYN GQQHNHQNQT SWQGN

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MSNLTCASGD LSASANSSIR NDSSSSTQQQ QPPQKKKRNL PGNPDPDAEV IALSPKSLMA  60
TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYLCPEP TCVHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRRDS  180
FITHRAFCDA LAQENSNAAR AINPLLSSSL PQLHGGFQPH HLSHHHVKRE VQDLQLQLPP  240
WMGGEAAASA GPSHHLSSNI NLSSSSPLFS TSSFDHQQSF LHQNPNPSSS DFQPSASAHM  300
SATALLQKAS EMGATVSKPS SMFLKPHDQQ HQASHMMPET TAFGSFMEQA GANSGGAAAA  360
SNNSLLHDMM MMTSHLQQSS SAARGGFDQL SSSPSFGDHH HQGFNGSMVM GSFAENVNPS  420
PQKKLITGES QLRRTSSTTD GGGGGGGSGG GGGGMNEGMT RDFLGLRAFS SQDDQDFFNM  480
AAAHGLDQHV VNSTSSANYN GQQHNHQNQT SWQGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	103	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein