PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311151
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 375aa    MW: 41853.8 Da    PI: 4.6133
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311151genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34411322102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k++e++ed++++ ++sws+  nsf+v+d+++f++ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F  
  RcHm_v2.0_Chr6g0311151  41 FLTKTFEMVEDSSTDAIVSWSRARNSFIVWDSHQFSSILLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLG 118
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+++ll++ikr+++
  RcHm_v2.0_Chr6g0311151 119 GQRHLLKTIKRRRH 132
                             ***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MEGVAVKEEM IACTVGSSSS SSSSLSPRPM EGLHELGPPP FLTKTFEMVE DSSTDAIVSW  60
SRARNSFIVW DSHQFSSILL PRYFKHNNFS SFIRQLNTYG FRKVDPDRWE FANEGFLGGQ  120
RHLLKTIKRR RHVSQSTHEG GGGACVELGQ YGLETELERL KRDRNVLRTE IVRLRQQQQN  180
SKELVIAMED RLQTTEKKQQ QIMNFLAKAL KNPSFIQNFA QKRELVGVGV GVEIGRKRRL  240
TASPSVENLQ EVPTAHVLDM AASQDQGELL TMESDFESLF SAAALDNESS SDINGSNLTS  300
IPTSGGGKLG AVNETIWDHL WSDELIGGNP EEEVVVGNDS EIDVEVEDLV ADPSEWGEDL  360
QDLVDQMDFL IKPNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKTIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-118HSF family protein