PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0311421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 156aa MW: 17862.4 Da PI: 4.8894

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0311421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.8	8.2e-32	96	154	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++edp +v++tYeg+Hnh+ RcHm_v2.0_Chr6g0311421 96 LDDGFKWRKYGKKMVKNSPNPRNYYKCSCEGCPVKKRVERDKEDPAFVITTYEGTHNHR 154 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MSNNNFNRSV QTPENDFSDQ PNFDEYLMFD DWLEEDHNYV ASGSAQNSVN QVNDDDSGGS 60 SSQLGGSTTN ENGSVLERQQ VKERVAFKMK SEVEILDDGF KWRKYGKKMV KNSPNPRNYY 120 KCSCEGCPVK KRVERDKEDP AFVITTYEGT HNHRTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	6e-45	WRKY family protein