PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 278aa    MW: 30749.6 Da    PI: 6.5169
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-141461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed+ l  ++k +G g W+  +++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr6g0311681 14 RGAWTALEDKVLTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                            89********************************************97 PP
2Myb_DNA-binding48.52e-1567111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr6g0311681  67 RGNISGDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                             6777889***************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGRSPCCSKE GLNRGAWTAL EDKVLTSYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SGDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLVKKAKPES  120
HSGSSKETSP APTKFRPRTP SATATQPQVI RTKATRLTRM LVPSLPLLID DYSTTTSPLD  180
LRVPQTQSVS SLPEDAANTE VHIQGTDAMN FGCNGFQAAA GEDEDAMGGY DIPLDDGMLN  240
DWTGNDNCDL EKYGASLDLD SLAFLLDSDD WLGQENSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-63MYB family protein