PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0311711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 299aa MW: 33918.1 Da PI: 8.3615

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0311711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l+d+++ +G g W++I+++ g++R++k+c++rw++yl RcHm_v2.0_Chr6g0311711 14 RGAWTAIEDQVLIDYINTHGEGKWRRIPKEAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.1	3.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr6g0311711 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111 7999****************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGRSPCCVNE GLNRGAWTAI EDQVLIDYIN THGEGKWRRI PKEAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT TLGKKVNNGQ 120 DDVHQVHLTV ENKNTKKKKK KKYKTKSLTT VLDSIAAIRT RAVRCNRVVV TSHLVPHPFV 180 KNVHGTALEE GINNSEEDNT ITTATATTTS PSENLVLEFD VGKLFNVSEN IPDSSDDYWE 240 LYQFGGGDKV LEDQYGGNIN NGGGSSNNYK WSSASSEPIL FSEEMLKDWM REDCFHHQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	142	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-61	MYB family protein