PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 274aa    MW: 30909.2 Da    PI: 6.3207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+ Ed++l+d+vk++G g W +I+++ g++R++k++++rw++yl
  RcHm_v2.0_Chr6g0311731 14 KGAWTAREDQILIDYVKKHGEGKWGKISKETGLKRCGKSVRLRWLNYL 61
                            79********************************************97 PP
2Myb_DNA-binding47.34.7e-1571111547
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr6g0311731  71 ADDEEELIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 111
                             579***************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRSSRFEKV GMKKGAWTAR EDQILIDYVK KHGEGKWGKI SKETGLKRCG KSVRLRWLNY  60
LRPDIKRGNI ADDEEELIIR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNS TLRRKLQQEN  120
HLNEIKENSS SPSGSGADED DPHSTKNNGG VGGGMVEPTS SYCFTNHNEK KEDHQRYHLE  180
STTTTTTNKT TFFSGATVEA EANKNDIELA GDDLSNDVTW NDFIMDLNEG QLDISEFLQT  240
DFSKLCESES PMKVEVGGCS TNHELPNNWA GGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-49MYB family protein