PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 230aa    MW: 26300.5 Da    PI: 8.4733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+ Ed+ l d+vk++G g W + +r+ g++R++k+c++rw++yl
  RcHm_v2.0_Chr6g0311741 15 KGAWTAHEDQVLRDYVKEYGEGKWGKMSRETGLKRCGKSCRLRWLNYL 62
                            79********************************************97 PP
2Myb_DNA-binding54.13.7e-1768111146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  RcHm_v2.0_Chr6g0311741  68 RGNITEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 111
                             7999******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MGRSSSRCDK EGANKGAWTA HEDQVLRDYV KEYGEGKWGK MSRETGLKRC GKSCRLRWLN  60
YLRPDIKRGN ITEDEEELII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN STIRKKQENS  120
SRRSRNERKT IKDPYLTNNE IRPTSSTRNE LAEQPFLSGV ERNIKAEPDS GDGFLQTTGE  180
SGMAWNFIMD LNAGQLSISE FLHTDFSKLC ELNTMVADCT NGADIGHLEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-56MYB family protein