PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 222aa    MW: 25692.8 Da    PI: 8.0833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.5e-201663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+eEd++l+++++ +G++ Wk++a + g++R++k+c++rw +yl
  RcHm_v2.0_Chr6g0311771 16 RGSWTAEEDQRLAQVIEVHGPRKWKSVATKAGLNRCGKSCRLRWMNYL 63
                            89********************************************97 PP
2Myb_DNA-binding50.54.6e-1669114148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  RcHm_v2.0_Chr6g0311771  69 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114
                             78999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MVPLSTRSYK NKEVNRGSWT AEEDQRLAQV IEVHGPRKWK SVATKAGLNR CGKSCRLRWM  60
NYLRPNIKRG NISDQEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLSKKIRH  120
NERSQKQNRL LCASSNPAAQ ELSSSSEPQN VELMENNAVP IGMEDDSTKR EENYFFKSMS  180
FNGSSGDEFL FDGSTADEGP LNLEWMNRFL EMDESWFTLH DI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.16e-56MYB family protein