PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 216aa    MW: 24872.5 Da    PI: 4.9636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-131663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W + Ed++ + +vk++G g W + +r+ g++R++k++++rw++yl
  RcHm_v2.0_Chr6g0311841 16 KGAWAASEDQIVKAYVKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63
                            799*******************************************97 PP
2Myb_DNA-binding54.23.4e-1769113147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +g+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr6g0311841  69 KGNITEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 113
                             6899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGRSSTYYDK NDGLKKGAWA ASEDQIVKAY VKKHGVGKWG KLSRETGLKR CGKSVRLRWL  60
NYLRPDIIKG NITEDEEELI IRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSTLKRKLEE  120
ENHLEVSKDE EIKEGFTSSA ADEDDPHLTK DNVIEDEDHH RQPHDVDVGV GVGATNNNGT  180
GDDEYLRDDL WWNNFIMDFN ATQLDISEFQ TDFPEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-52MYB family protein