PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 210aa    MW: 24180.8 Da    PI: 4.9488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-1756100147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +g+ T+eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr6g0311851  56 KGNITEEEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 100
                             6899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MRSSTYYDKN DGLKKGAWAA SEDQIVKAYV EKHGLKRCGK SVRLRWLNYL RPDIIKGNIT  60
EEEEELIIRL HKLLGNRWSL IAGRIPGRTD NEIKNYWNST LKRKLQQENH LEVSKDEEIK  120
EDLSSSVVVA AATDEDVSRL TKNNVIEDEV NHRQHHDADV GVGVAAEATN NKGTGDDEYL  180
RDDLWRNNFI MDFNDTQFDV SELQNDIPEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-35MYB family protein