PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0312551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 149aa    MW: 16493.6 Da    PI: 9.9111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0312551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-1468127155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++   +g+Wv+e r+ps+   g   k+ +r +lg+f+ta e a a+++a+k+++g
  RcHm_v2.0_Chr6g0312551  68 SSYRGVSQGI-WGKWVSESRVPSSntHGltlKKvARSWLGTFDTAVEVALAYDKAAKAMYG 127
                             67*****887.**********8774666998779************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MMPESSDGDR QMGKRPRVDD TLVKWDKYNE NSDFAKDGFV NRMPHKMPTT GARKGCMRGK  60
GGPENLNSSY RGVSQGIWGK WVSESRVPSS NTHGLTLKKV ARSWLGTFDT AVEVALAYDK  120
AAKAMYGPVA RLNFPKSLET SISDETTES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-31ERF family protein