PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0176801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 750aa MW: 83728.6 Da PI: 5.7112

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0176801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	133	155	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff+r G+C+ d+C+F+Hgp RcHm_v2.0_Chr7g0176801 133 VPCIFFQR-GFCSKADKCPFSHGP 155 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MVVGAQPKPQ PQSQPQQLQQ QQQQPQPQPE ASAEEEALKR NTDCVYFLAS PVSCKKGSEC 60 EYRHSEHALY NPRDCWFWLN GNCLNLKCSF RHPPLDGLLG SPAASSAGPS LPLSHTVTTP 120 ATNATFNSSK QAVPCIFFQR GFCSKADKCP FSHGPNPITS SKVPQAPAAT HGTEPSSLKK 180 IFGGIQKCTQ VMKIPQVSAS KIVGVPPQSK PAPKVETAPP RNGVGIERNV LVTRDFDDEA 240 LRYKARSVLP AMNGDSTGQA NHFLRAHVSE NHGFQNGKDV DEHLRESSPG FDVLVDDELG 300 DSDYYHGEEQ FGIKRGHDGR NLNSVNEYDL DCPTDYNSIA DGDRERFRDP RGYDPYDQMQ 360 GRYAWDQHRA SSERLLVGSA HSERRGYRKS DSPDHIDGSD LRHRLSKHRR GNGLRSIISN 420 DYDGHVEERK SRPRRDSQQL PSHEGSLSSR LRGRIKLPGG SSPVNSSDLR QEREADRGRS 480 RDRSREGLSP RRPQIMSHQG RLRDRIQGRV QEDYDNEVRN FGVVPRMRRE IVDERSTEFS 540 HPKRLSELKG GVDAEIREHS YLGKPNNVKM DNNQLSEGDL SFEGPKPLSE ILKRKREAEA 600 AAASGSRKRS SVNKQRNNEK EGPVRNPSGS ETGAITMMHN SQSPVAKEET KSATTDAVGA 660 ENEKIDVAPG QSSEGHNDGE LETEDGLIYD ETLEDHELEG EDQREGEYDY EQGEDGEYTY 720 EEGENADAEE EYLEEEDGDD FAKKIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MVVGAQPKPQ PQSQPQQLQQ QQQQPQPQPE ASAEEEALKR NTDCVYFLAS PVSCKKGSEC  60
EYRHSEHALY NPRDCWFWLN GNCLNLKCSF RHPPLDGLLG SPAASSAGPS LPLSHTVTTP  120
ATNATFNSSK QAVPCIFFQR GFCSKADKCP FSHGPNPITS SKVPQAPAAT HGTEPSSLKK  180
IFGGIQKCTQ VMKIPQVSAS KIVGVPPQSK PAPKVETAPP RNGVGIERNV LVTRDFDDEA  240
LRYKARSVLP AMNGDSTGQA NHFLRAHVSE NHGFQNGKDV DEHLRESSPG FDVLVDDELG  300
DSDYYHGEEQ FGIKRGHDGR NLNSVNEYDL DCPTDYNSIA DGDRERFRDP RGYDPYDQMQ  360
GRYAWDQHRA SSERLLVGSA HSERRGYRKS DSPDHIDGSD LRHRLSKHRR GNGLRSIISN  420
DYDGHVEERK SRPRRDSQQL PSHEGSLSSR LRGRIKLPGG SSPVNSSDLR QEREADRGRS  480
RDRSREGLSP RRPQIMSHQG RLRDRIQGRV QEDYDNEVRN FGVVPRMRRE IVDERSTEFS  540
HPKRLSELKG GVDAEIREHS YLGKPNNVKM DNNQLSEGDL SFEGPKPLSE ILKRKREAEA  600
AAASGSRKRS SVNKQRNNEK EGPVRNPSGS ETGAITMMHN SQSPVAKEET KSATTDAVGA  660
ENEKIDVAPG QSSEGHNDGE LETEDGLIYD ETLEDHELEG EDQREGEYDY EQGEDGEYTY  720
EEGENADAEE EYLEEEDGDD FAKKIGVMFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	429	436	RKSRPRRD
2	519	529	RNFGVVPRMRR