PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0177481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 268aa    MW: 30463 Da    PI: 4.8761
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0177481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.61.4e-5461331128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtdeelv++yLk+k+ g+++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+
  RcHm_v2.0_Chr7g0177481   6 LPPGFRFHPTDEELVNYYLKRKIIGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKS 91 
                             79****************************.99**************84335556888***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd++vls +++++g+kktLv+y+grap+g +tdWvmheyrl
  RcHm_v2.0_Chr7g0177481  92 TGKDRRVLS-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133
                             *********.8999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAPVGLPPGF RFHPTDEELV NYYLKRKIIG QEIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVLS QNRAIGMKKT LVYYRGRAPQ  120
GIRTDWVMHE YRLDDKADCL DDTSAGIQDS FALCRVFKKN GICAEIEEQG GQSSTSDVSL  180
LIHERSSQLL AAGVLHHNDH CSIETMSPEN IPRASSSSCL QDLEEEDKDD SWMQFITDDP  240
WSSSNTPING TTAEVDLSES HAGVTFTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-125NAC family protein