PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0177741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 493aa MW: 54995.2 Da PI: 8.7622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0177741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RcHm_v2.0_Chr7g0177741 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	15.9	3.7e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ RcHm_v2.0_Chr7g0177741 132 WVCEKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MLANNSSSSV PCSEPFSCLE NGNNNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRLRPESQ AVVLQPPACL SRTASSPSPS SETNFSSRTT PNWPSASALV VPKPLHDNTK 240 LILSSPPAGH GISDRNRNSS KNINANSLYN LDLQLATTSN DNNPNHIEVS VSSSKRDVEN 300 HSTQLQLSIG SCDNFGDHHH PKNINIESNR NSPRESSTST NEHHHQQMKP AGESASTSRI 360 IKEEAREQLR LALAEKAYAE EARQQAEQQI ELAEQEFANA KRIRQQAQAE LDKAQALKEH 420 AVKKINSTIL QITCQACKQQ FQARTRQANP HENSLAFSYM SSALTTTTSE GGQLEINASA 480 TRTDDRANSS AKP

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MLANNSSSSV PCSEPFSCLE NGNNNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRLRPESQ AVVLQPPACL SRTASSPSPS SETNFSSRTT PNWPSASALV VPKPLHDNTK  240
LILSSPPAGH GISDRNRNSS KNINANSLYN LDLQLATTSN DNNPNHIEVS VSSSKRDVEN  300
HSTQLQLSIG SCDNFGDHHH PKNINIESNR NSPRESSTST NEHHHQQMKP AGESASTSRI  360
IKEEAREQLR LALAEKAYAE EARQQAEQQI ELAEQEFANA KRIRQQAQAE LDKAQALKEH  420
AVKKINSTIL QITCQACKQQ FQARTRQANP HENSLAFSYM SSALTTTTSE GGQLEINASA  480
TRTDDRANSS AKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-112	C2H2 family protein