PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0177811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 407aa MW: 44324.2 Da PI: 7.2639

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0177811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	284	337	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ RcHm_v2.0_Chr7g0177811 284 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 337 9****************************************************7 PP
2	Myb_DNA-binding	47	6e-15	285	336	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ RcHm_v2.0_Chr7g0177811 285 RMRWTSSLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 336 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MPHKGILESL NPIPDLSLHI SPPNSAPNEP ADSAAFNIWR CRDNTDVHDG GLVKSHSDDG 60 ATTPLAADTE LSLANPTSAS EAESDSNSWK MMKSSYFARD QQQAAAEKHN NISHGLSMLD 120 VAELGIKPIK GIPVYNTTPA AANCSFPFSP PNLDPSRDIS AAANSKLCFY QTPPPYLSPA 180 APFRPGGGAA MGAGVGGGFE SRFNGITMDS LRVPQQHLQY LNHHHHQQQQ LLQHQHQCGV 240 GVGIGIGGHH HHHHHGDFSN TNGFIMRSRF TPKSYQSKRN MRAPRMRWTS SLHARFVHAV 300 ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKN TDKPVASSDG SGDEDLMSTT 360 TTTHHQNSAN GLLNQRGGSN ASLNLEQDTE HPSSNLWGNS SRYDLHL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MPHKGILESL NPIPDLSLHI SPPNSAPNEP ADSAAFNIWR CRDNTDVHDG GLVKSHSDDG  60
ATTPLAADTE LSLANPTSAS EAESDSNSWK MMKSSYFARD QQQAAAEKHN NISHGLSMLD  120
VAELGIKPIK GIPVYNTTPA AANCSFPFSP PNLDPSRDIS AAANSKLCFY QTPPPYLSPA  180
APFRPGGGAA MGAGVGGGFE SRFNGITMDS LRVPQQHLQY LNHHHHQQQQ LLQHQHQCGV  240
GVGIGIGGHH HHHHHGDFSN TNGFIMRSRF TPKSYQSKRN MRAPRMRWTS SLHARFVHAV  300
ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKN TDKPVASSDG SGDEDLMSTT  360
TTTHHQNSAN GLLNQRGGSN ASLNLEQDTE HPSSNLWGNS SRYDLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-51	G2-like family protein