PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0178691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 182aa MW: 20917 Da PI: 8.5855

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0178691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed++l+d+++++G g+W++ ++ g++R++k+c++rw +yl RcHm_v2.0_Chr7g0178691 13 KGAWSIQEDQKLIDYIQKHGEGCWNSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.1e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l RcHm_v2.0_Chr7g0178691 66 RGSFGEDEEDLIIRLHTLLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MRKPCCEKTE MTKGAWSIQE DQKLIDYIQK HGEGCWNSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGSFG EDEEDLIIRL HTLLGNRWSL IAGRLPGRTD NEVKNYWNSH LKKKLLNIGT 120 TTLRPNKLRE INHAPYNKLV KYFNDMDDEV VDEVSTDSAS TEISSCLVPK LNLDLSLSLA 180 LE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	9e-70	MYB family protein