PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0178781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 1019aa MW: 115718 Da PI: 7.9446

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0178781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.9e-10	421	466	2	46
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 g+WTt+Ed+ ++ +v++ g +W+ Ia+ +g++Rt+ qc r+q RcHm_v2.0_Chr7g0178781 421 GPWTTDEDKTILYLVQKKNGVnDWNNIAEAVGTNRTPFQCLARYQR 466 89***********8765436********************96 PP
2	Myb_DNA-binding	45.7	1.5e-14	475	518	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l+ av+ +G g+W ++a+ ++ gRt+ qc +rw k RcHm_v2.0_Chr7g0178781 475 REWTKDEDAKLASAVEAFGEGNWQSVASALN-GRTGTQCSNRWKK 518 68***************************.*********98 PP
3	Myb_DNA-binding	43	1e-13	528	571	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + RcHm_v2.0_Chr7g0178781 528 GKWTPEEDKRLIVAQMLFGSKSWNKTAQFVP-GRTQAQCRDRYVN 571 79***************************.*********77 PP
4	Myb_DNA-binding	47.6	3.7e-15	580	623	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l+ a++++G W+++a++++ +Rt+++c rw + RcHm_v2.0_Chr7g0178781 580 GEWTEEEDSRLIAAIEEYGHC-WSKVAACVP-HRTDNMCWRRWKVL 623 78***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence
MSPLAENDEL SYYDEQDDED DDDDDGFNAD IEALRRACML TGKDPDDITT KNDDENPSSN 60 QNDDVDLSSA PNSDSDFDED LELLRKIKSQ FSNTSLKPLS LKPLCTLLPP SASDEEEDDY 120 QTLLAVRKRF AAYENDTQEK SAEQIDPSCK SVEETCNEVP GTDAHERFLT LVTDNEEGQP 180 STSIEWVQSD SCEPTLLPTK SSGFPKSALA FLDAINKNRS CQKFLRSKLI QIQAKIEENN 240 KLKQRVKILR DFQAHCKRRT GEALSQKKDP RVQLILTKKP RADSKAHDRA ISAMSYGPEE 300 NSHVANYRKA STKFPLSLDR KNWSEVEKKD LQNGIRQQFQ EMVLQSSVDD SSYSETPDGD 360 SNDIDKILAS IKDLEITPYS IREFLPKVNW EQLASMYVPG RSGGECEARW LNWEDPLISH 420 GPWTTDEDKT ILYLVQKKNG VNDWNNIAEA VGTNRTPFQC LARYQRSLNA SILKREWTKD 480 EDAKLASAVE AFGEGNWQSV ASALNGRTGT QCSNRWKKSL HPTRTRAGKW TPEEDKRLIV 540 AQMLFGSKSW NKTAQFVPGR TQAQCRDRYV NSLEPSLRCG EWTEEEDSRL IAAIEEYGHC 600 WSKVAACVPH RTDNMCWRRW KVLFPDEVPL LREEKRIRKT ALIRNFVDRE KERPALGPND 660 FLLQDVTSMK TLTYPRKTGG LSQVPKKIKP RRHRNDSQLC SEEEPGTSNS EVETYDGEDA 720 SKKKKKKKKK VLKQRQRRHK DNEPTGDCAA VVPVPKKIRP RRNRNNGQIP GISDSEVRTC 780 DGDDGPKKKK VLKQRYRRHK GTELTGECKA IVPVSNEDDA HKEPTEMSCS DALKKKKVLK 840 HRHRKHRGTE PTGECKAIVP VSNEDDVRKE PTAMSYSDQI IGTSDEDDTV SFYLHKSRKR 900 KLEAGRRKLV RGQKLGLQEP MRGVLRICPG SDHETDDPVV ASMGKKYTKK RHAQTTKQHV 960 ICNDPDAGDL PKQEEVTIKP GKEQVSAGAD SGDDITLACF LNRLKKRRES GRGDIQMPR

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence

MSPLAENDEL SYYDEQDDED DDDDDGFNAD IEALRRACML TGKDPDDITT KNDDENPSSN  60
QNDDVDLSSA PNSDSDFDED LELLRKIKSQ FSNTSLKPLS LKPLCTLLPP SASDEEEDDY  120
QTLLAVRKRF AAYENDTQEK SAEQIDPSCK SVEETCNEVP GTDAHERFLT LVTDNEEGQP  180
STSIEWVQSD SCEPTLLPTK SSGFPKSALA FLDAINKNRS CQKFLRSKLI QIQAKIEENN  240
KLKQRVKILR DFQAHCKRRT GEALSQKKDP RVQLILTKKP RADSKAHDRA ISAMSYGPEE  300
NSHVANYRKA STKFPLSLDR KNWSEVEKKD LQNGIRQQFQ EMVLQSSVDD SSYSETPDGD  360
SNDIDKILAS IKDLEITPYS IREFLPKVNW EQLASMYVPG RSGGECEARW LNWEDPLISH  420
GPWTTDEDKT ILYLVQKKNG VNDWNNIAEA VGTNRTPFQC LARYQRSLNA SILKREWTKD  480
EDAKLASAVE AFGEGNWQSV ASALNGRTGT QCSNRWKKSL HPTRTRAGKW TPEEDKRLIV  540
AQMLFGSKSW NKTAQFVPGR TQAQCRDRYV NSLEPSLRCG EWTEEEDSRL IAAIEEYGHC  600
WSKVAACVPH RTDNMCWRRW KVLFPDEVPL LREEKRIRKT ALIRNFVDRE KERPALGPND  660
FLLQDVTSMK TLTYPRKTGG LSQVPKKIKP RRHRNDSQLC SEEEPGTSNS EVETYDGEDA  720
SKKKKKKKKK VLKQRQRRHK DNEPTGDCAA VVPVPKKIRP RRNRNNGQIP GISDSEVRTC  780
DGDDGPKKKK VLKQRYRRHK GTELTGECKA IVPVSNEDDA HKEPTEMSCS DALKKKKVLK  840
HRHRKHRGTE PTGECKAIVP VSNEDDVRKE PTAMSYSDQI IGTSDEDDTV SFYLHKSRKR  900
KLEAGRRKLV RGQKLGLQEP MRGVLRICPG SDHETDDPVV ASMGKKYTKK RHAQTTKQHV  960
ICNDPDAGDL PKQEEVTIKP GKEQVSAGAD SGDDITLACF LNRLKKRRES GRGDIQMPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	722	728	KKKKKKK
2	722	730	KKKKKKKKK
3	723	729	KKKKKKK
4	724	730	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein