PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0179221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 279aa    MW: 31659.7 Da    PI: 7.7603
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0179221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-17187278699
                             ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             +++++l+ ++l++p  f+ eh  ++   +  ++tl+++  r+W+v ++++k+++   + ++GW+ Fv++n+L++gD ++F+l+g+  
  RcHm_v2.0_Chr7g0179221 187 MTESYLS-AILRVPSYFTIEHlcEIG--SYSDVTLQTSGERTWTVHCTIDKSRRNgRFNAAGWRAFVQDNQLEAGDDCLFQLIGE-- 268
                             4444444.469**********87333..4458***************99777776677889**********************94.. PP

                             E..EEEEE-S CS
                      B3  90 felvvkvfrk 99 
                             ++l+v v+r+
  RcHm_v2.0_Chr7g0179221 269 RKLKVYVYRA 278
                             5568888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MATMSRPMAS RSKREGRGHA FPVDSPSFCL KIVTAVDLQD GKELPEPAVR KYGNCMADSI  60
FLKVPNCGTS WPIELKKTIR GSRIWLQKGW EQFTDFYSID QDYFIVFSYE GEHSHFQVHI  120
FHCNNMEMDY PIRGGGAGGC MSTPNLKGSS FPSASSVGRD QNNDNQHDFY GANNFIFGDK  180
PSFRITMTES YLSAILRVPS YFTIEHLCEI GSYSDVTLQT SGERTWTVHC TIDKSRRNGR  240
FNAAGWRAFV QDNQLEAGDD CLFQLIGERK LKVYVYRAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-15B3 family protein