PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0179801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 393aa MW: 43844.1 Da PI: 9.3336

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0179801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.8	3.8e-23	30	95	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ ++ + v l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg RcHm_v2.0_Chr7g0179801 30 RKQKSLGLLCSNFIALYDREGVTSVGLDDAAARL---GV--ERRRIYDIVNVLESVGVLSRKAKNQYTWKG 95 79***************999********.....****************************98 PP
2	E2F_TDP	76.9	1.9e-24	168	248	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+ + ++l+e+a+ L+ + +++k+RRiYDi+NVL+++nliek ++k++++w g RcHm_v2.0_Chr7g0179801 168 RREKSLALLTQNFVKLFVCSTVESISLDEAARLLLGDahnasVMRTKVRRIYDIANVLSSMNLIEKthtadTRKPAYKWLG 248 689************************************999***********************9*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MESAAPPPPP PPPPPPPQPE TASRHHAYSR KQKSLGLLCS NFIALYDREG VTSVGLDDAA 60 ARLGVERRRI YDIVNVLESV GVLSRKAKNQ YTWKGFGAIP IALHQLKEEG LKENFNTFHG 120 DLQGSDDPKC SQGSDDEEGD ESGPATGSQN ENPGVHPKSS GNSKNDNRRE KSLALLTQNF 180 VKLFVCSTVE SISLDEAARL LLGDAHNASV MRTKVRRIYD IANVLSSMNL IEKTHTADTR 240 KPAYKWLGLK GKDVVSSASD ESRKRAFGTD ITNVSCKRGK VESSTAGKLE AQKQKLHETT 300 VRQRERREST VHKVDRNNLE DSKENTKSYQ FGPFAPVTIA RAGNFNMKKV DWDNLSSTYR 360 PQYQNQALKE LFSHYMEAWK SWYSEVVEKP IQT

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MESAAPPPPP PPPPPPPQPE TASRHHAYSR KQKSLGLLCS NFIALYDREG VTSVGLDDAA  60
ARLGVERRRI YDIVNVLESV GVLSRKAKNQ YTWKGFGAIP IALHQLKEEG LKENFNTFHG  120
DLQGSDDPKC SQGSDDEEGD ESGPATGSQN ENPGVHPKSS GNSKNDNRRE KSLALLTQNF  180
VKLFVCSTVE SISLDEAARL LLGDAHNASV MRTKVRRIYD IANVLSSMNL IEKTHTADTR  240
KPAYKWLGLK GKDVVSSASD ESRKRAFGTD ITNVSCKRGK VESSTAGKLE AQKQKLHETT  300
VRQRERREST VHKVDRNNLE DSKENTKSYQ FGPFAPVTIA RAGNFNMKKV DWDNLSSTYR  360
PQYQNQALKE LFSHYMEAWK SWYSEVVEKP IQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-140	E2F/DP family protein