PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0180351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 365aa MW: 42486.8 Da PI: 6.3984

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0180351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.5e-38	80	180	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++rrkC+++C+lapyfp +qpk f+n+hklFG+ n+lk+lk++++ + +am+s++y+A++r + PvyG+ +vi++lq q+ RcHm_v2.0_Chr7g0180351 80 ACAACKYQRRKCTPECPLAPYFPPDQPKMFQNAHKLFGVCNILKILKSVDPCLKFEAMKSIIYQANIRDKFPVYGCWEVIWQLQYQI 166 7************************************************************************************ PP DUF260 88 eqlkaelallkeel 101 + +++el+ ++++l RcHm_v2.0_Chr7g0180351 167 MVAEQELQNVHKQL 180 *******99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MLLLIPTFFF TITIFLTSFF FLILLLHHYR HLCNIHLSNS FLSFRWLHLP HWFEPPPQRS 60 RRHLIGSDNI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPPDQPKMFQ NAHKLFGVCN 120 ILKILKSVDP CLKFEAMKSI IYQANIRDKF PVYGCWEVIW QLQYQIMVAE QELQNVHKQL 180 ALYRQHHYQQ QQQISAMPDY VTSQLELGMA PPNNNNNTTS LLHHSTPQSY DNNNTAIPHA 240 LPVTQQQQQQ QQQPPYSHRS DNAYTSAYDI DSKENIAGEN VLWAQNPFTN NNSSINENND 300 NAETVQSQFG VSQTLAIESE DVQDYDELHP FFDTIDDRQS YIDSKEAYDS SRYIRLSQND 360 ELMTM

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MLLLIPTFFF TITIFLTSFF FLILLLHHYR HLCNIHLSNS FLSFRWLHLP HWFEPPPQRS  60
RRHLIGSDNI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPPDQPKMFQ NAHKLFGVCN  120
ILKILKSVDP CLKFEAMKSI IYQANIRDKF PVYGCWEVIW QLQYQIMVAE QELQNVHKQL  180
ALYRQHHYQQ QQQISAMPDY VTSQLELGMA PPNNNNNTTS LLHHSTPQSY DNNNTAIPHA  240
LPVTQQQQQQ QQQPPYSHRS DNAYTSAYDI DSKENIAGEN VLWAQNPFTN NNSSINENND  300
NAETVQSQFG VSQTLAIESE DVQDYDELHP FFDTIDDRQS YIDSKEAYDS SRYIRLSQND  360
ELMTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-49	LBD family protein