PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0181001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 249aa    MW: 27745.2 Da    PI: 6.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0181001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.1e-053584154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +r  +  rE++ R+++N+ f  L + l  +    ++   Ka+iL +A++ +k+L
  RcHm_v2.0_Chr7g0181001 35 KRIHKAVREKQKREHLNDLFLDLSDALELN----QQNTGKATILCEATRLLKDL 84
                            6888899********************998....68899*********999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGSKDPAPVV DKVNEATQPV DRVCPGKKIQ GKMPKRIHKA VREKQKREHL NDLFLDLSDA  60
LELNQQNTGK ATILCEATRL LKDLLGQIES LRNENVSLLS ESNYMTVEKN ELREDTSALE  120
TQIERLQSEL QERVRQSKPD LNVPPVEVRQ EVASHFPGNC VGFPAQESGL QQAPAVFVMP  180
LHPDLQTYPP ADSAHLTSKI NSNVSKPHPR YPTSVDSWPF QLLSEQPAAG KDSRQNGHST  240
SGYNGHDNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.22e-69bHLH family protein