PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0181021

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 426aa MW: 45529.8 Da PI: 7.3544

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0181021	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.3	4.6e-41	93	228	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s RcHm_v2.0_Chr7g0181021 93 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSV 179 789*************************************************************99999888766666666664444 PP TCP 88 g..................................kaaksaakskksqk 102 + ++ +s++ +++++ RcHm_v2.0_Chr7g0181021 180 PsqlrssyyspnfsssihqssqnqrrnlfqglglsSSDSSSTLLNFQTN 228 4555555665443333333333444444444444322222223333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MEGGDDHFHH HHHHYQQQQQ QQHHHRPNFP FQLLDQKKED EAASCSNNSA AASAYPSLAI 60 SSAVDPINPI NTNATASTAV TTAVAAEPSK KPPPKRTSTK DRHTKVDGRG RRIRMPALCA 120 ARVFQLTREL GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP 180 SQLRSSYYSP NFSSSIHQSS QNQRRNLFQG LGLSSSDSSS TLLNFQTNTM HSMLQAKQEL 240 RDTVSLDLSE AASAAEGSMG RKRRPAEQDL NQMGSGYLLQ SSSGAIPASH HSQIPANFWM 300 LANSNNPAVM SGDPIWTFPS VNNSGLYRGT MSGGLHFMNF PTPVALMPSQ QQMGGSGGGG 360 GGDNGGNDGS GGGDHHNMSD GQLNMLAGLN PYRHMSSESP QQQASGSHSH HGGGGDDRHD 420 STSHHS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MEGGDDHFHH HHHHYQQQQQ QQHHHRPNFP FQLLDQKKED EAASCSNNSA AASAYPSLAI  60
SSAVDPINPI NTNATASTAV TTAVAAEPSK KPPPKRTSTK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP  180
SQLRSSYYSP NFSSSIHQSS QNQRRNLFQG LGLSSSDSSS TLLNFQTNTM HSMLQAKQEL  240
RDTVSLDLSE AASAAEGSMG RKRRPAEQDL NQMGSGYLLQ SSSGAIPASH HSQIPANFWM  300
LANSNNPAVM SGDPIWTFPS VNNSGLYRGT MSGGLHFMNF PTPVALMPSQ QQMGGSGGGG  360
GGDNGGNDGS GGGDHHNMSD GQLNMLAGLN PYRHMSSESP QQQASGSHSH HGGGGDDRHD  420
STSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	8e-38	TCP family protein