PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0181811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 184aa    MW: 20484.2 Da    PI: 10.2693
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0181811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.84.6e-2827054123
                     NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                             +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfy+grap gek +Wv+
  RcHm_v2.0_Chr7g0181811   2 GEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-GKSLVGMKKTLVFYRGRAPIGEKNKWVI 70 
                             579**************************************.999***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MGEKEWYFFC VRDRKYPTGL RTNRATEAGY WKATGKDKEI YKGKSLVGMK KTLVFYRGRA  60
PIGEKNKWVI CRVFEKSAGG KKIHITGLVN LGSHGTEMRS SGLPPLLDTA PYNGAKTRPA  120
SESNYVPCFS NHESIDSQRN QGIVDYIKGN PLFSVSSNPS NNNAFPRVTF QNSLYSAPVS  180
SGNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.18e-66NAC family protein