PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0182471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 139aa    MW: 15688.8 Da    PI: 6.7659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0182471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-1539132193
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-....TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt....kGWkeFvkangLkegDfvv 81 
                             f+ + +++++l++  + ++ +fa++h        s +l+l++++ r+W   li+  + ++ v++    +GWk F ++n+L+egD++v
  RcHm_v2.0_Chr7g0182471  39 FIMIKMTAYYLRRE-MFISASFATKHlcR--AGASCDLSLQTPDMRTWIADLIVYETTESRVFAkikgAGWKAFKEENHLEEGDVCV 122
                             55667899999998.9**********662..445679***************8855555544444777******************* PP

                             EEE-SSSEE..E CS
                      B3  82 Fkldgrsefelv 93 
                             ++l+++ +f  +
  RcHm_v2.0_Chr7g0182471 123 LELIEECKF--R 132
                             ****98777..4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MPNAYLKAAR AISNSSGSSG NEHQNVLSTA NSFKSDKPFI MIKMTAYYLR REMFISASFA  60
TKHLCRAGAS CDLSLQTPDM RTWIADLIVY ETTESRVFAK IKGAGWKAFK EENHLEEGDV  120
CVLELIEECK FRVSYSEQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-09B3 family protein