PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0182641

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 493aa MW: 54753.1 Da PI: 8.6507

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0182641	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	95	113	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cgk F ++ L H++ RcHm_v2.0_Chr7g0182641 95 CRECGKGFQSWKALIAHMK 113 9*****************7 PP
2	zf-C2H2	12.2	0.00056	320	342	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H RcHm_v2.0_Chr7g0182641 320 YECGTCNKVFRSYQALGGHRASH 342 99**********99999998887 PP
3	zf-C2H2	12.5	0.00044	402	424	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H RcHm_v2.0_Chr7g0182641 402 HSCPICLKVFPTGQALGGHKRSH 424 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MEEDQEFKHF CKLCSKSFPC GRSLGGHMRS HLIDNNSTED QKFINSRVKV SSLSNYTETG 60 FETGPQAGYG LRENPKKTWR IAGSSEETSV DNKLCRECGK GFQSWKALIA HMKCHSNSTT 120 NSFENEQDSW TSSKAVDSQS ENETTNTTRR RTTTSRRRRT RYMATTTTTS SSNFSIVNNN 180 ASSSVTEIEQ EQQEEVAWCL MMLSRDVGHW GGLKIVADLD HSISDNNSGF SDAPSSLKMN 240 RVSEIKEATL ETFKLKKLKK KMLDEEVSVG GFSKSDKTKK NLILKKTELA EAQLGSNKFN 300 SSNKRKLQDA YDHSSKRSKY ECGTCNKVFR SYQALGGHRA SHKKIKGCFA SKIESSEHTT 360 EFDTDLSPDH PIASDHSKLS NVIDHQDDVV KVESISTKSK GHSCPICLKV FPTGQALGGH 420 KRSHLIGGSA DSKSSQSTIV IPKPATPEVR EFLDLNLPAP VEEEISTSHA AAAQAFKPWW 480 VGTSHKPYEA LVS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MEEDQEFKHF CKLCSKSFPC GRSLGGHMRS HLIDNNSTED QKFINSRVKV SSLSNYTETG  60
FETGPQAGYG LRENPKKTWR IAGSSEETSV DNKLCRECGK GFQSWKALIA HMKCHSNSTT  120
NSFENEQDSW TSSKAVDSQS ENETTNTTRR RTTTSRRRRT RYMATTTTTS SSNFSIVNNN  180
ASSSVTEIEQ EQQEEVAWCL MMLSRDVGHW GGLKIVADLD HSISDNNSGF SDAPSSLKMN  240
RVSEIKEATL ETFKLKKLKK KMLDEEVSVG GFSKSDKTKK NLILKKTELA EAQLGSNKFN  300
SSNKRKLQDA YDHSSKRSKY ECGTCNKVFR SYQALGGHRA SHKKIKGCFA SKIESSEHTT  360
EFDTDLSPDH PIASDHSKLS NVIDHQDDVV KVESISTKSK GHSCPICLKV FPTGQALGGH  420
KRSHLIGGSA DSKSSQSTIV IPKPATPEVR EFLDLNLPAP VEEEISTSHA AAAQAFKPWW  480
VGTSHKPYEA LVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-25	C2H2 family protein