PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0182741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 173aa    MW: 20043.6 Da    PI: 8.4691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0182741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.78.2e-31131501128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratk.... 79 
                             lp+GfrF Ptdeelv++yL +k+ ++ ++++++i+e++    y+ +P++L  +++ +e+ew+fF+++ + + +   +++r ++    
  RcHm_v2.0_Chr7g0182741  13 LPVGFRFMPTDEELVSHYLMNKACSRAVPVADAIQEINatrFYSNHPKSLV-TFSDGEREWFFFIHEGNDSCSsHAQRKRNVRevgn 98 
                             79*************************999888887753338999*****6.7788999*****99987765413333333222334 PP

                     NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                               g+Wk  g+++++++++g++  +k  L++++g  +++k+++t+W m ey+l
  RcHm_v2.0_Chr7g0182741  99 gLGFWKPNGSENPIYNEDGNVFATKIYLTYFSGscHSNKPKRTHWKMVEYHL 150
                             4789***************************8755889999**********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MESQKVVVSS NLLPVGFRFM PTDEELVSHY LMNKACSRAV PVADAIQEIN ATRFYSNHPK  60
SLVTFSDGER EWFFFIHEGN DSCSSHAQRK RNVREVGNGL GFWKPNGSEN PIYNEDGNVF  120
ATKIYLTYFS GSCHSNKPKR THWKMVEYHL QIRREWVVLG RLQRGMDYTG FIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.18e-18NAC family protein