PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0183041

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 640aa MW: 72459.9 Da PI: 4.7845

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0183041	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	295	315	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ RcHm_v2.0_Chr7g0183041 295 YCVVCGKKFKSEKQWKNHEQS 315 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV 60 LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA 120 DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD 180 QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER 240 ERKKKEERER KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DDEEEEEERK RNELYCVVCG 300 KKFKSEKQWK NHEQSKKHKD KIAEFRESIG DEELDEEEVD DLGDQMREGL EIGEEDDGAG 360 VSAGDDEFYD FGDEILTEKL DDDDEDDNGG GDDDDEMELL QAMAARHKSR EKLYGDGDDD 420 GEMELLKAMA ARQKSRENVG EAVGVDDGDS GSEDEMDILE ALVAGRKSRK NAASRVEVED 480 PLVTGVHVDN DSNGVESVPM EYENRKPTRR KGKSKKSGGE TKRVDMNEIS NGQSEAASEN 540 DNSDVKESTS DSMVEMASTN EKQDDQIARK KKSSKQTVEK KKENVKKEAN GKSKSSSKGK 600 KAKATSKNSS NACEACGEEF GSRNQLHKHL GDTGHASLKR

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV  60
LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA  120
DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD  180
QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER  240
ERKKKEERER KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DDEEEEEERK RNELYCVVCG  300
KKFKSEKQWK NHEQSKKHKD KIAEFRESIG DEELDEEEVD DLGDQMREGL EIGEEDDGAG  360
VSAGDDEFYD FGDEILTEKL DDDDEDDNGG GDDDDEMELL QAMAARHKSR EKLYGDGDDD  420
GEMELLKAMA ARQKSRENVG EAVGVDDGDS GSEDEMDILE ALVAGRKSRK NAASRVEVED  480
PLVTGVHVDN DSNGVESVPM EYENRKPTRR KGKSKKSGGE TKRVDMNEIS NGQSEAASEN  540
DNSDVKESTS DSMVEMASTN EKQDDQIARK KKSSKQTVEK KKENVKKEAN GKSKSSSKGK  600
KAKATSKNSS NACEACGEEF GSRNQLHKHL GDTGHASLKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK
2	201	209	KKQRKKAKR
3	223	245	KKRDKRVMDMMVKREEERERKKK
4	240	252	RERKKKEERERKK
5	569	606	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-145	C2H2 family protein