PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0183521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29099 Da    PI: 9.5098
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0183521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.3e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gklye++s
  RcHm_v2.0_Chr7g0183521  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFCS 59
                            79***********************************************96 PP
2K-box104.71.1e-34791745100
                   K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             + ++  ++++++++qe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk+iRs+K++++l+++++lq++e++l e+n
  RcHm_v2.0_Chr7g0183521  79 EANQPVNETQQNSYQEYLKLKARVEVLQRSQRNLLGEDLGPLNTKELEQLEHQLESSLKHIRSTKTQFMLDELSDLQNREQMLVETN 165
                             55665667799**************************************************************************** PP

                   K-box  92 kaLrkklee 100
                             k+Lr+klee
  RcHm_v2.0_Chr7g0183521 166 KSLRRKLEE 174
                             ******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSG RGKLYEFCSS  60
LSMMKTLEKY HRCNYGALEA NQPVNETQQN SYQEYLKLKA RVEVLQRSQR NLLGEDLGPL  120
NTKELEQLEH QLESSLKHIR STKTQFMLDE LSDLQNREQM LVETNKSLRR KLEETNLQGA  180
PLRLAWDGGY GQNNIHQHNN RLPPQSQGLF QPLQGNNTSA LQIGYTPLSS DHHHQMNAGN  240
PGQNVNGFIP GWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-92MIKC_MADS family protein