PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0184251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 214aa    MW: 23668.4 Da    PI: 9.7258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0184251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-164290355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + GVr+++ +grWvAeI+d s+   + r +lg+f+ aeeAa a+++a++ l+g
  RcHm_v2.0_Chr7g0184251 42 FLGVRQRP-SGRWVAEIKDSSQ---NLRLWLGTFDRAEEAALAYDKAARVLRG 90
                            67******.7*********543...5***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MDSLQSSTPN QKETFHENKE SGCTSTRAIK VPKKAKINGR RFLGVRQRPS GRWVAEIKDS  60
SQNLRLWLGT FDRAEEAALA YDKAARVLRG RNAKTNFPSS HQQHGMNFMN IHEENCNILK  120
KNPRLYQLLQ HAIMKNHAAI ARSSSSSTII GSKGGQFDSN NNFDALVEET IVCSSSTSTA  180
SDVQDHDDYH CALSFGTSKV YSSVVVAPTF SATS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18ERF family protein