PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0184541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 456aa    MW: 51697.4 Da    PI: 4.9012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0184541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052161177117
                             EEETTTTEEESSHHHHH CS
                 zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                             y+Cp+Cgk+++  + L+
  RcHm_v2.0_Chr7g0184541 161 YVCPNCGKRYNALDALQ 177
                             9**********999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    
MSIEPFNRLV KLAARAFYDD ITTKGDNQPK TGRSDNRGIA VVVLDALSRR QWVREEDLAK  60
DLKLHSKQLR RTLRFFEEEK LVTRDHRKET AKGAKIFSAA VAATADGQQH TKEGEEKIKL  120
HTHSYCCLDY AQIYDVVRYR LHRMRKKLKD ELEDKNTVQE YVCPNCGKRY NALDALQLIS  180
LEDEYFHCES CNGELVAESD KLASQDVGDG DSNARRQRRE KLKDMLQNME VQLKPLMEQI  240
NRVKDLPAPE FGTLQAWEAR AHAQRRAENG ESSAMDPSKS SHGLGYGGTP MPFLGDTKVE  300
VDFGNEGKGN DVKSEADITG QKILPPWMIK QGMNLTKEQR GEVKQEAKMD GTLAAPEYSD  360
DKKSNAEDND KAFQDEYFKA YYAALIKRQE EEAAKSRQVG MKSKRDLNEG DEGEDNVDWQ  420
EAPVAGDANG NYKVNDLNVE ADATAEDEDD IDWEES