PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0185481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 378aa MW: 42241.2 Da PI: 8.2148

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0185481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.1	1e-54	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL +kv++ +++ ++++ vd++k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tg RcHm_v2.0_Chr7g0185481 5 LPPGFRFHPTDEELITYYLGRKVSDVSFTS-QAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTG 90 79***********************999.88***********988999***************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke+l+ +g lvg+kktLvfy+grap+gekt+Wvmheyrle RcHm_v2.0_Chr7g0185481 91 KDKEILR-QGVLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 131 **9.99****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MQENLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YRGRAPRGEK 120 TNWVMHEYRL ENKHHPFKSS TSKEEWVVCR VFQKSIALKK PQQITSSSPQ SVDSLGETNS 180 MINEFGDVEL PNFMNNIANS SSTGFISNNM SIPEGNNYNV IDNKRINNDV NMISTTLNMN 240 NWLGAREAAA SGAILPAAAL GSWPSSLLSP SNLSSVNSLL LRALQLRSSS ASTNSTIYQQ 300 PIRDATAAGL EDHYSSFMAA QQQQQQQQQP GLMSHFGTDH NMNSSNLQAS SSSKDQVMDS 360 VPQSQQHPGQ PFNLDSIW

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MQENLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YRGRAPRGEK  120
TNWVMHEYRL ENKHHPFKSS TSKEEWVVCR VFQKSIALKK PQQITSSSPQ SVDSLGETNS  180
MINEFGDVEL PNFMNNIANS SSTGFISNNM SIPEGNNYNV IDNKRINNDV NMISTTLNMN  240
NWLGAREAAA SGAILPAAAL GSWPSSLLSP SNLSSVNSLL LRALQLRSSS ASTNSTIYQQ  300
PIRDATAAGL EDHYSSFMAA QQQQQQQQQP GLMSHFGTDH NMNSSNLQAS SSSKDQVMDS  360
VPQSQQHPGQ PFNLDSIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-101	NAC family protein