PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0186441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 233aa    MW: 26422 Da    PI: 7.8904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0186441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WTt Ed ll+++++ +G g+W + +++ g+ R++k+c++rw +yl
  RcHm_v2.0_Chr7g0186441 14 RGPWTTIEDTLLIQYIQSHGEGHWMSLPKKAGLLRCGKSCRLRWMNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding52.61.1e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr7g0186441  67 RGNITPDEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                             7999******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRTPCCSKE GLQRGPWTTI EDTLLIQYIQ SHGEGHWMSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI TPDEEDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT NRSKRLNNAG  120
STERGVSSVE GQLKKDDRGC VAKVKVHQPK AIRVSANSII RNNNILAELG HHDAEVSNDL  180
HDHKHFGEAL VCENVMDFDV FIQGYEEYQQ QLLKADQDLD GVHLDSFVDS LLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-62MYB family protein