PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0187951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 325aa    MW: 35126.8 Da    PI: 6.5106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0187951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182474256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                            ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a++ l+g+
  RcHm_v2.0_Chr7g0187951 24 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARTLRGA 74
                            689******.7*********....4456*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MAAVRAQNDG VRGRRKSSSR GHHRFVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEDA  60
ARAYDDAART LRGANARTNF ELPQSNGAGG GDSGMENVEP FSFEDVCGNG AEEDGLLGAL  120
KAKLLDGKGF SRVQEKIDSS PLVVPRGGGF GFANPPNQDG SYIARSSKEK KFSHTRCIQP  180
PSHKNDHVTG HDVVFHISDQ TEVAVSGHVA SNSGMVWTNE PPAYEVTWSN TLPMPTWPVP  240
TDQSIVSMSY TDQCSMELPT TSRDHGKVTA VGVTQQLSQI EGAMGGGAWS ADQQYMHCDN  300
NWAAAANGTW ESQGLYYQPS VSGVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-17ERF family protein