PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0188691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 237aa    MW: 26348.9 Da    PI: 7.253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0188691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1856105255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp+    + +r++lg+f tae Aa a+++a++k++g
  RcHm_v2.0_Chr7g0188691  56 HYRGVRQRP-WGKFAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALKFKG 105
                             7********.**********94....45************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MSAMVSALSQ VISGNSSTDT NQNPALQLPQ QSGAAVLEHD QSHQQAPDQG SVRRRHYRGV  60
RQRPWGKFAA EIRDPKKAAR VWLGTFETAE AAALAYDEAA LKFKGSKAKL NFPERVQGTS  120
ELGGYLTTNT VAHQPLISDY HHQQLVYPNN IPNTGQYYPQ FYGNLNYGQT DQRIYYQPTT  180
SSSPPFIPIS QAQEEDQQQQ QALSFPMPAF GSSSSNLDPE YPQNNTARNF DNSHSRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-29ERF family protein